Lyme disease, science, and society: Camp Other
Showing posts with label pcr. Show all posts
Showing posts with label pcr. Show all posts

Tuesday, September 20, 2011

0 How To Avoid Sample Contamination

A quick and dirty primer for those who want to ensure that their samples do not get cross-contaminated with DNA from other bacteria, viruses, etc.:
  1. Use aerosol barrier pipette tips.
  2. UV-irradiate all workstations used for the setup of master mix preps and PCRs.
  3. Treat all surfaces and tube racks with a 10% bleach solution.
  4. Use frequent and careful glove changes.
  5. Perform DNA extraction, PCR setup, and PCR product analysis in different rooms.
  6. Use clean systems.
  7. Use a negative control such as UV-treated, deionized water.
  8. Do not do bacterial work, etc. during any human DNA extraction.
Follow these simple tips, and then when others look at your research and claim that Borrelia burgdorferi could only be found where it was due to  sample contamination, point out that a number of steps were taken to prevent it.

At what point when an experiment is repeatedly reproducible does one stop saying the end result was due to sample contamination and begin saying the end result was genuine?

What other steps can you take to prevent and eliminate sample contamination?

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Tuesday, September 13, 2011

0 New Lyme Disease Detection Tests

The latest buzz in the Lyme disease patient community is over Advanced Laboratory Services' new culture test for Borrelia burgdorferi.

The new test uses histology and growth characteristics in conjunction with fluorescent immunostaining to detect Borrelia burgdorferi. Positive results can be further confirmed using standard molecular biology methods (PCR) based on DNA sequencing.

The test is now available for use in all states except California, New York, and Florida, which require a higher level of lab certification for testing. Physicians can obtain lab test kits from ALSI in Pennsylvania.

(I'm still looking for more information on the design and development of this test. While it's been mentioned in numerous sources that it is based on Dr. Eva Sapi's research, I have only seen a citation for her work on morphological changes in Borrelia burgdorferi when exposed to different antibiotics in vitro where the new culture method is mentioned there only in passing.)

I'm keeping an eye on this test and look forward to hearing more about it. But I'm also very interested in hearing more about a new test to detect Lyme disease which was developed by this intelligent young woman, Temple Douglas.

Temple won the 2010 Intel Science Talent Search award for her project, Application of Hydrogel Nanoparticles for Early Lyme Disease Diagnosis. Here's an interview with her:



Temple, at age 18, conducted research on the application of hydrogel nanoparticles for early Lyme disease diagnosis. Her research provides a means to reduce the number of chronic cases of Lyme disease, thus saving many people from the associated complications. A clinical trial is being planned.

Not only was she an Intel Science Talent Search finalist, but she has a patent on this test,too:

BORRELIA BURGDORFERI BACTERIAL ANTIGEN DIAGNOSTIC TEST USING POLYMERIC BAIT CONTAINING CAPTURE PARTICLES
http://www.sumobrain.com/patents/wipo/Borrelia-burgdorferi-bacterial-antigen-diagnostic/WO2011068844.html

I am looking forward to hearing about these clinical trials.

Which test is going to be the most sensitive and accurate?

Additional links:
Official Press Release For Advanced Laboratory Services [PDF file]:
http://researchednutritionals.com/Announcements/LymeCultureTest.pdf

Student's research paper on Lyme disease ranks nationally
http://ww2.fairfaxtimes.com/cms/story.php?id=1021


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Friday, May 6, 2011

6 Repost: Researchers on Persistence in Lyme Disease

The following is a repost from the Daily Kos.  Go to this link to see over 100 comments and counting on this post there: http://www.dailykos.com/story/2011/05/05/973226/-Researchers-on-Persistence-in-Lyme-Disease

Over the years I've had to hear the criticism from well-meaning strangers and some friends that Lyme Literate Doctors or LLMDs are treating a disease that does not exist, and that doctors who treat Lyme disease with long-term antibiotics are taking unfair advantage of patients.

Sometimes the discussion can get a little heated with their concern for me, as they think I may be making a mistake. I take a deep breath, and then I say to them, "I hear that you're concerned, and I can see you have issues with these doctors, but what if there is evidence that Lyme disease can infect individual patients for more than 3-4 weeks? Is it not reasonable to treat them with longer term antibiotics when there is evidence they have an existing infection?"

Usually they nod at this point, wondering where I'm going to go with the discussion next. So I ask, pointedly, "Other than looking at case studies, what about researchers who think Lyme disease may be able to persist, or at least have enough doubt that they know more research is needed to find out why a significant portion of the population who contracts Lyme disease has persisting symptoms? What's in it for them?"

I usually get a thoughtful look, and a lot of silence. So I continue.

"I'll tell you what's in it for them: The pursuit of scientific knowledge. Some people just want to know what really is going on with Borrelia burgdorferi, and they are working on figuring it out. Not without putting themselves in a position of controversy, either - but most continue to do the benchwork they need to do and publish."

Indeed, many people who are new to the controversy over Lyme disease being a chronic, persistent infection have heard about the doctors, heard about the IDSA; may have heard about various bills before their state senates and heard about the film, Under Our Skin.

But not everyone has heard about the research that can leave one questioning the common idea that Lyme disease is easy to treat and cure. Not everyone has read Cure Unknown, even though it is practically considered the Lyme patient community's go-to guide.

"Here, read this," a patient at a support group leans over a table, handing Cure Unknown to a newcomer, "Borrow it for as long as you want - we have more than one copy in the group, and it will help you understand the controversy."

I've seen this act take place a number of times, and for many patients it is their first exposure to the story of Lyme disease, how Dr. Willy Burgdorfer discovered the spirochete that caused Polly Murray and her family grief, the creation of Lyme disease support groups, the story of Dr. Joe Burrascano's Senate testimony in the early 1990's, and the ongoing controversy over Lyme disease.

It is also often their first exposure to researchers who are working to understand Lyme disease, and find out how the organism operates, and why some patients continue to have persistent symptoms after 21-28 days of oral antibiotics.

Some of this research is what I will cover here.

Beagles With Borrelia

Dr. Reinhard Straubinger, a researcher at Cornell University, New York, placed infected ticks on 19 beagles and allowed them to feed. Two months later, he tested the dogs and found 18 were infected with Borrelia burgdorferi, one was uninfected.

He then gave 12 of the infected dogs doxycycline or amoxicillin, and left 6 dogs untreated. Eleven of the twelve infected dogs had developed lameness and recovered on antibiotics, and their antibody response declined. Four of six untreated dogs went on to develop arthritis.

Six months later, all the dogs were necropsied. All the treated dogs still had spirochetes in their tissues, albeit at a reduced load - but had a persisting infection, as if they had not been treated.[1]

Straubinger observed that in untreated dogs, their antibodies had consistently risen throughout the study - but treated dogs had a "dip" in their antibodies. Their antibodies initially decreased during treatment, but as time went on, they were on the rise six months after initial infection - probably due to the surviving spirochetes, according to Straubinger.

Straubinger went on to do a similar study as a controlled study with 16 beagles who were treated with different kinds of antibiotics after four months of disseminated infection. He then went on to treat 12 of the dogs with antibiotics for one month. After a little over a year, he performed a necropsy on them and found that spirochetes were detected in low levels in multiple tissues regardless of antibiotic choice.[2]

Of Mice and Men

Dr. Stephen Barthold and Dr. Emir Hodzig, of the University of California at Davis, have done a number of well-known studies on mice.

In 2008, he treated one group of mice with ceftriaxone three weeks after infection with Borrelia burgdorferi (Bb) and treated another group of mice with ceftriaxone much later on - four months after initial infection.[3]

Each of these two groups had their own control group of mice which were not treated with antibiotics.

All the mice were tested. The results: One month after treatment, none of the mice had clinical signs of Lyme disease, nor could cultures detect Bb.

But two of five mice had positive Bb cultures. Three months later, one mouse transmitted living spirochetes to 9 uninfected ticks. Five mice were examined one month after treatment and their tissues were positive for Bb DNA.

To add to the story, three months after treatment, tissue of two of these mice still had positive tissue samples, two could transmit living spirochetes to uninfected ticks, and one mouse could transmit an infection to another via a skin graft.

After the mice were necropsied three months after treatment, small numbers of spirochetes were still found in collagen-rich areas of the mice's tissues in their hearts, tendons, and ligaments.  It didn't matter how soon they'd been treated, either: all of them had spirochetes.

In his abstract, Dr. Barthold states:

"...when some of the antibiotic-treated mice were fed on by Ixodes scapularis ticks (xenodiagnosis), spirochetes were acquired by the ticks, as determined based upon PCR results, and ticks from those cohorts transmitted spirochetes to naïve SCID mice, which became PCR positive but culture negative. Results indicated that following antibiotic treatment, mice remained infected with nondividing but infectious spirochetes, particularly when antibiotic treatment was commenced during the chronic stage of infection."

These live spirochetes could be transmitted, but oddly, Dr. Barthold could not get them to grow in culture.

Are these spirochetes pathogenic, though? Do they cause disease, can they replicate? Barthold states in his abstract that they are nondividing but infectious.

Trial of Tigecycline

After these experiments, in 2010 Barthold and Hodzic went on to test the effectiveness Tigecycline on persisting Borrelia burgdorferi in mice.[4]

In his paper, Barthold states:

"Clinical assumptions are complicated by the ephemeral, variably recurrent, and diverse nature of both objective clinical signs and subjective symptoms of Lyme borreliosis. What is not known is whether or not antibiotic treatment completely eradicates the infection, and this has generated debate among the medical and lay communities."

He admits to the controversy over the persistence of Lyme disease after antibiotic treatment, and also states it is not known if it completely eradicates infection.

He continues:

"Antibiotics are likely to kill most B. burgdorferi organisms, but the immune system is needed to fully eliminate the remaining spirochetes. However, therein lies the challenge, since Borrelia burgdorferi has evolved to persistently infect fully immunocompetent hosts. Persistent infection has been shown to be the rule, rather than the norm, in a variety of laboratory animal species, including mice, rats, Peromyscus leucopus, hamsters, gerbils, guinea pigs, rabbits, dogs, and nonhuman primates. Based upon culture and/or PCR, persistent infections have also been documented in humans from both Europe and the United States Therefore, the “mop up” phase, which is dependent upon the immune system, is likely to be ineffective against an agent such as B. burgdorferi, which is highly effective at evading host clearance."

In the study itself, a new first-in-class antibiotic, tigecycline (glycylcycline), was evaluated during the early dissemination (1 week), early immune (3 weeks), or late persistent (4 months) phases of Borrelia burgdorferi infection in C3H mice (mice bred to emphasize joint inflammation).

Mice were treated with high or low doses of tigecycline, saline, or ceftriaxone. After 3 months of treatment, infection was assessed using cultures, quantitative ospA real-time PCR, and subcutaneous transplantation of joint and heart tissue into SCID mice (severely compromised immune deficient mice).

The result was that tissues from all saline-treated mice were culture and ospA PCR positive, tissues from all antibiotic-treated mice were culture negative, and some of the tissues from most of the mice treated with antibiotics were ospA PCR positive, although the DNA marker load was markedly decreased compared to that in saline-treated mice.

Antibiotic treatment during the early stage of infection appeared to be more effective than treatment that began during later stages of infection.

The viability of noncultivable spirochetes in antibiotic-treated mice (demonstrable by PCR) was confirmed by transplantation of tissue grafts from treated mice into SCID mice, with dissemination of spirochetal DNA to multiple recipient tissues, and by xenodiagnosis, including acquisition by ticks, transmission by ticks to SCID mice, and survival through molting into nymphs and then into adults.

Furthermore, PCR-positive heart base tissue from antibiotic-treated mice revealed RNA transcription of several B. burgdorferi genes. These results extended previous studies with ceftriaxone, indicating that antibiotic treatment is unable to clear persisting spirochetes, which remain viable and infectious, but are nondividing or slowly dividing.

Dr. Staubinger, Dr. Barthold, Dr. Hodzic, and their teams are not considered researchers on the fringe, but mainstream researchers who have approached the issue of persistence with an open mind.

One person everyone might want to listen to regarding the possibility of Borrelia burgdorferi's ability to persist in its host is its very own discoverer, who stated the following during an interview:

"I am a believer in persistent infections because people suffering with Lyme disease, ten or fifteen or twenty years later, get sick [again]. Because it appears that this organism has the ability to be sequestered in tissues and [it] is possible that it could reappear, bringing back the clinical manifestations it caused in the first place. These are controversial issues for microbiologists, as well as the physicians who are asked to treat patients."

~ Dr. William Burgdorfer, discoverer of the Borrelia burgdorferi spirochete, 2009



So we know the spirochetes persist. Researchers know they do. The evidence we need to consistently provide is of their infectious nature after antibiotics have been used. Why this issue of persistence is considered controversial remains a question, given that syphilis can enter a latent, dormant state in its host.

In 2009, Gary Wormser, who denies the existence of Chronic Lyme disease, wrote his own critique of some of these studies:

"What are causes of the attenuation of the spirochetes that persist posttreatment? Are they in the process of dying? Are they producing mRNA, and if so, which mRNA? Are they motile? Can they replicate? Are they genetically altered? Can they regain pathogenicity? "

In his own conclusion, he states, "The biological nature of these spirochetes is unclear," along with some caveats about the likelihood of their being pathogenic.[5]

He thinks they are not infectious. Other researchers - like Barthold - think they are infectious. Patients who have experienced relapsing-remitting symptoms definitely think they are, and would like to put this issue to rest and find treatment that is 100% effective. In the meantime, antibiotics are the treatment of choice.

This is why I push for more research. The research that has already been done is noteworthy and requires further investigation, and only by determining the truth can the controversy be put to rest.

My future directions suggested for researchers:
1) Use non-murine models for study - higher order mammals with more collagenous tissue around their brains
2) After animals have been treated with antibiotics and spirochetes found in tissue, instead of killing them, study them for a few years and repeatedly expose infected host animals to stress (in accordance with study design for ethical treatment of animals).
3) Periodically retest animals for antibodies, PCR, and culture, including CSF and ultimately, brain tissue. Use advanced testing methods in development.

Who knows, maybe it will happen - at the end of Barthold's Tigecycline study he stated, "Further studies are under way in the mouse model to determine if the postantibiotic-persistent organisms return to a cultivable and pathogenic state or if they eventually die out."

References:
1. Straubinger RK, Summers BA, Chang YF, Appel MJ. Persistence of Borrelia burgdorferi in experimentally infected dogs after antibiotic treatment. J Clin Microbiol. 1997 Jan;35(1):111-6.
2. Straubinger RK. PCR-Based quantification of Borrelia burgdorferi organisms in canine tissues over a 500-Day postinfection period. J Clin Microbiol. 2000 Jun;38(6):2191-9.
3. Hodzic E, Feng S, Holden K, Freet KJ, Barthold SW.Persistence of Borrelia burgdorferi following antibiotic treatment in mice. Antimicrob Agents Chemother. 2008 May;52(5):1728-36. Epub 2008 Mar 3.
4. Stephen W. Barthold, Emir Hodzic, Denise M. Imai, Sunlian Feng, Xiaohua Yang,
and Benjamin J. Luft Ineffectiveness of Tigecycline against Persistent Borrelia burgdorferi. Antimicrobial Agents and Chemotherapy, Feb. 2010, p. 643–651.
5. Gary P. Wormser, Ira Schwartz. Antibiotic Treatment of Animals Infected with Borrelia burgdorferi. Clin Microbiol Rev. 2009 Jul;22(3):387-95.

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Monday, April 4, 2011

2 Blog Log: Spirochetes Unwound

For those who have not seen it yet, I highly recommend the blog, Spirochetes Unwound.

Although entries are not posted often at the SU site, they are informative, science-based, and ask important questions. Occasionally, people give interesting responses, too.

This post from 2009 discusses the Barthold mouse experiment (E. Hodzic, S. Feng, K. Holden, K.J. Freet, and S.W. Barthold. (2008). Persistence of Borrelia burgdorferi following antibiotic treatment in mice. Infection and Immunity 52(5):1728-1736) and this comment follows:

Ichneumon said...

"Maybe you know this, but something analogous has been seen in syphilis post-treatment. However, I'm not sure but I don't think there was any truly positive identification of treponemes in the papers I read on this, which were mighty old. Just morphological identification via electron micrography, which is rather tentative.

If I may, how does some ten-minute trial of one or two agents really dismiss the whole "abx-refractory lyme disease" model, when four or five agents are routinely used for years (with mixed success) in treating M. avium complex in man, when diverse bacterial taxa form biofilms that are highly abx refractory in vivo, when chlamydiae in monocytes are rendered highly abx refractory (Gieffers 2001), and when diverse taxa are rendered abx-refractory in vitro by treatments as simple and diverse as starvation, heat shock, pH shock, etc? Everyone ought to admit that there is no truly convincing case for or against this highly politicized model, and take a balanced view of it like you do. Granted, it's clear that this syndrome is not a classical bacteriosis, if "classical" means it can be steamrolled by a brief treatment with agents that mash the putative miscreant in glass on growth-permissive media. The question is whether that is the only sort of bacteriosis that exists.

SCID mice are especially susceptible to developing severe inflammation when infected with B. burgdorferi. Nevertheless, inflammation was not detected in the SCID mice

But, in addition to what you already stipulated, it's also worth mentioning that human refractory lyme (assuming it actually is an infectious disease) might well be mediated by the adaptive IS - if so, a SCID mouse obviously won't hunt."

- Eric J. Johnson

That's an interesting comment.

Hey Eric, come on over here and write some more comments like this...

I wonder which Eric J. Johnson this is?

Hm...

Risk factors for HIV-1 shedding in semen

Article Abstract:

Risk factors for HIV-1 shedding in semen are discussed based on an investigation in 149 men of factors that may be compartment-dependent, the genitourinary tract of the male being immunologically different from blood. Systemic and local genitourinary tract factors influence risk of shedding. Findings indicate that measures of systemic virus burden alone may not be reliably predictive of infectivity of semen.

Author: Collier, Ann C., Corey, Lawrence, Zeh, Judith, Krieger, John N., Hooton, Thomas M., Koutsky, Laura A., Johnson, Eric J., Coombs, Robert W., Ross, Susan O., Cent, Anne, Dragavon, Joan, Speck, Carl E., Lee, Willa, Sampoleo, Reigran T.
Publisher: Johns Hopkins University Press
Publication Name: American Journal of Epidemiology
Subject: Health
ISSN: 0002-9262
Year: 1999

Naaaaaw... you don't think so, do you?

I'm not so sure, either...

Hm.

Addendum: If you are interested in the interaction between NKT cells and Lyme disease Borrelia, you may also want to see this post on SU... it includes a video of green glowing NKT cells in liver tissue.
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Thursday, March 10, 2011

3 Mullis' PCR and Borrelia burgdoferi's discovery

Remember I got a pile of books on loan to read? And remember that eccentric Nobel prize winner, Kary Mullis, who was featured in a TED video I posted?

According to Bull's Eye: Unraveling the Medical Mystery of Lyme Disease, Kary's new invention, developed in 1983 - Polymerase Chain Reaction (PCR) - was instrumental in learning more about Borrelia burgdorferi's history:
"One medical researcher who was quick to apply this technique in the medical arena was Dr. David Persing, then at the Yale University Department of Pathology. Being at Yale, Persing was interested in Lyme disease. Among many other projects, he and colleagues used PCR on 102 dried-out or alcohol-preserved tick specimens from the Museum in Comparative Zoology in Cambridge, Massachussetts. The ticks had been collected from various areas in New England between 1945 and 1951; each was tagged with the exact location where they had been collected. The researchers also examined another batch of ticks from the Smithsonian collection in Washington, D.C., some dating back as far as 1924. They found ticks that were positive for the DNA of B. burgdorferi from Montauk Point and from the adjacent Heather Hills State Park from the mid-1940s. 
Several years later, the same group with additional colleagues reported the results of similar experiments done on tiny biopsy specimens taken from the ears of archived mice from the same museum. They found two specimens that tested positive by PCR anaylsis for B. burgdorferi from mice orginally captured near Dennis, Massachusetts (on Cape Cod), in 1894! The DNA from these specimens was identical to the B31 strain that Willy Burgdorfer had found on Shelter Island. 
European investigators have reproduced these experiments using archived ticks from various parts of Europe including England and have found borrelial DNA dating back to the late 1880s as well. If the Lyme spirochete had been around for so long, why did it begin to surface as a recognized medical entity only in the past few decades? This question can be answered in one word --- deer."

I always find history fascinating, especially the connections between technology and information gathering. Here the PCR was invented around shortly after the time that news that Borrelia burgdorferi was the agent of Lyme disease was published in Science in 1982. We know far more about Bb now than we would have if this (or a similar technology) had not been developed at the time it was.
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Thursday, February 17, 2011

1 Persistence of Borrelia Infection After Antibiotic Use In Mice

For the random passerby who types "is chronic lyme real" into Google, here is more data to consider, coming from Columbia University.

Credit to: Dr. Brian Fallon, Lyme and Tick-borne Diseases Research Center, Columbia University.
Link source as of Feb. 17, 2011: http://www.columbia-lyme.org/research/keyarticles.html

Persistence of Borrelia burgdorferi in mice after antibiotic therapy.

Two studies have recently been published which reveal that Bb may persist in the mouse despite antibiotic therapy. These studies support much earlier work by Straubinger et al in the dog model (1997) and Bockenstedt et al (2002) in the mouse model. Bockenstedt et al (2002) showed that Bb persistence can occur after antibiotic treatment and that these spirochetes could be acquired by ticks (xenodiagnosis) but that the infected ticks could not transmit infection to naïve hosts – suggesting that the spirochetes were attenuated in that they had become non-infectious. Straubinger et al (1997) had shown that even after 30 days of antibiotic treatment, Bb spirochetes could be demonstrated in 3/12 dogs by culture, and DNA could be demonstrated by PCR in 9/12 dogs long after treatment.

More recently, Hodzic et al from UC Davis in California reported in Antimicrob Agents Chemother. (2008;52(5):1728-36) a study which examined the effectiveness of antibiotic treatment using ceftriaxone or saline for 1 month. Mice were treated either early in the infection (3 weeks) or later (4 months). Tissues were tested by immunohistochemistry, PCR, culture, transplantation of allografts, and xenodiagnosis at 1 and 3 months after treatment. Tissues from the mice treated with antibiotics were culture negative, but tissues from some of the mice remained PCR positive and intact antigen-positive organisms with spirochetal morphology were visualized in collagen-rich tissues. Xenodiagnosis demonstrated that uninfected larval ticks after feeding on the antibiotic-treated mice were able to acquire spirochetes (confirmed by PCR) and then transmit these spirochetes to naïve SCID mice which became PCR positive but culture negative. This study therefore demonstrated that antibiotic treatment in the mouse model does not result in eradication of the Bb spirochetes and that some of these spirochetes were infectious, although attenuated in activity.

Yrjanainen et al from Univ of Turku in Finland reported in J Infectious Disease (2007; 195(10):1489-96) a study which examined whether anti-tumor necrosis factor-alpha would have a beneficial effect on Bb-infected mice. C3H/He mice were infected with B. garinii A218 or B. burgdorferi sensu stricto N40. In study 1 (with B. garinii) and in study 2 (with Bb SSN40), 2 weeks after infection, 10 mice were treated with ceftriaxone only for 5 days and 10 mice were treated with anti-TNF-alpha only. In another group of 10 mice, anti-TNF was added simultaneous to the ceftriaxone at 2 weeks after infection while in another group of 10 mice anti-TNF was added at 6 weeks after infection (ie, 4 weeks after ceftriaxone). Finally, a fifth group of mice was treated with saline as a sham treatment. For the group that received ceftriaxone only, no samples were positive by culture or by PCR at 2 weeks after infection. However, among those mice treated with anti-TNF-alpha either at 2 weeks or 6 weeks after infection, spirochetes grew from one-third of the mice. Contrary to earlier findings by Bockenstedt et al (2002) in which the spirochetes detected after antibiotic treatment were attenuated in activity, the recovered spirochetes in this study did not appear to be attenuated, as ceftriaxone sensitivity rates, plasmid profiles, and virulence rates were similar to those of bacteria used to infect the mice. This study demonstrated that a portion of B. burgdorferi-infected mice still have live spirochetes in their body, which are activated by anti-TNF-alpha treatment.

Commentary

 These two studies demonstrate that Bb spirochetes can persist in the mouse after ceftriaxone therapy. The Finnish study was remarkable in that culture and PCR were negative after ceftriaxone but, after additional treatment with anti-TNF-alpha, viable spirochetes were recovered. TNF is a pro-inflammatory cytokine which, when blocked, typically results in a reduction in clinical inflammation; for this reason, such treatment is used for patients with rheumatoid arthritis. To the surprise of the authors, viable spirochetes were recovered in these PCR- and culture-negative mice after TNF blocking treatment was given. Also interesting is that anti-TNF treatment did not result in the expected finding of a reduction of joint swelling.

The Finnish study was the first study to demonstrate that immunomodulatory treatment of animals infected with Bb could convert them from culture negative to culture positive. The California study was remarkable in that only tick-feeding was capable of extracting infectious but non-replicating attenuated spirochetes; without having done that step of xenodiagnosis and then transferring the tick to feed on naïve SCID mice, the authors’ conclusion would have been that infectious spirochetes do not persist in the mouse model as culture was negative. The authors further concluded that negative culture and PCR can not be relied upon as markers of treatment success.

We do not know the extent to which these findings can be translated to the human situation. Nevertheless, the activation of infectious spirochetes after anti-TNF therapy in mice should alert clinicians to the possibility that anti-cytokine therapy may result in a similarly increased risk of activating latent infection among patients with a history of treated Lyme disease. At this point, we do not know whether attenuated spirochetes are capable of inducing illness-symptoms in mice or humans; while it is possible that spirochetal mRNA may be producing surface lipoproteins that stimulate systemic symptoms, this hypothesis needs to be tested in the next phase of this important research.

BAFallon, MD



So here is food for thought. I would like to see these studies repeated by someone else for confirmation of these findings. Of course, this is in mice and not in humans, but I've said before, mice have been used by researchers for ages now to determine disease courses and treatment possibilities in humans. 


One thought after this is that if there is an immune dysregulation element to persistent infection, it may be harder to treat that aspect of it if treatment itself activates a latent infection. 


One next step for discovering how Borrelia burgdorferi persists would be to carry out  xenodiagnosis in human hosts based on the first study above - of which a similar study, Searching for Persistence of Infection in Lyme Disease, is being conducted by the NIH. This study has been received with some element of controversy, though - and will be discussed in a future post.
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Thursday, January 6, 2011

0 TED Talk: Aiding the immune system to fight infection

I caught this talk recently on TED that was more of a teaser for me. I found it interesting and wanted to share here.

About this TED Talk

Drug-resistant bacteria kills, even in top hospitals. But now tough infections like staph and anthrax may be in for a surprise. Nobel-winning chemist Kary Mullis, who watched a friend die when powerful antibiotics failed, unveils a radical new cure that shows extraordinary promise.(Recorded at TED 2009, February 2009 in Long Beach, California. Duration: 4:35)



[ More here, in an interview with Kary Mullis. ]

So, in case you didn't know, in the early 1980s, Kary Mullis developed the polymerase chain reaction (PCR), which is a way of making copies of a DNA strand using the enzyme polymerase and some basic DNA "building blocks." Mullis shared the 1993 Nobel Prize in Chemistry for developing this technique.

But Mullis has moved on to doing research on chemically programmable immunity using Altermune technology.

Altermune, LLC, in collaboration with Ron Cook of Biosearch in Novato, CA, re-directed antibodies whose job used to be binding to something called the alpha-Gal epitope or galactose-alpha-1,3-galactosyl-beta-1,4-N0-acetyl glucosamine (now say that three times fast, I dare you) to influenza using DNA aptamers attached to the alpha-Gal epitope.

These linkers can grab influenza virion and turn it over to a human macrophage, which gobbles it up. Testing was done using a drug that can be inhaled.

Altermune is currently focusing on Influenza A and drug resistant Staphylococcus aureus.

This is fascinating.

Programming your own immune system to more effectively fight infections.

I've been wondering what other technologies we could use to combat infection and avoid the issue of antibiotic resistance, which is becoming more crucial as there has been little in the way of new antibiotic research and development during the past decade.

If Kary Mullis can help us use our own immune systems to effectively fight infection, maybe we can not only avoid resistance - but the side effects of many antibiotics and antiviral medications as well.

I'm sure there are some drawbacks and kinks to work out. I'm wondering, for example, how this technology handles transfections. I need to replay the entire TED talk and watch it again, and read the research.

In the meantime, if you are up to the task, here is a more technical Powerpoint presentation on Altermune I have found online:

www.bibalex.org/supercourse/supercoursePPT/37011-38001/38071.ppt

Note of bizarreness: Read the comments on the original TED post. Apparently Mullis is an AIDS denialist? Does anyone know about that?

Dig out your googling chops... the more you learn about Mullis, the more bizarre his story becomes.
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The Camp Other Song Of The Month


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